Predict cell labels of query data using cell labels of reference data.

Usage

Run.LabelTransfer.Single(
  ref_data,
  ref_group,
  query_data,
  do.cosine = T,
  do.scale = F,
  conf.score = T,
  proj.dims = 30,
  eta = 0.25,
  smooth.k = 5
)

Arguments

ref_data: Reference data matrix.
ref_group: Reference labels.
query_data: Query data matrix.
do.cosine: Whether to cosine normalize the data matrices.
do.scale: Whether to perform scaling.
conf.score: Whether to calculate confidence scores.
proj.dims: Projection dimension of query data to reference data.
eta: The proportion of cells that are considered reliably projected.
smooth.k: Using kNNs to smooth the scores.